X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/62cbf7ae299d16727aeb1a48aba27af9f77a3073..c604c42bb92a6301b13a250582eabed509adaae1:/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl

diff --git a/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl b/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
index 4b3d1a7..0b6c102 100644
--- a/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
+++ b/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
@@ -25,7 +25,7 @@ inputs:
     format: edam:format_2572 # BAM
     label: Recalibrated BAM for given interval
     secondaryFiles:
-      - .bai
+      - ^.bai
   reference:
     type: File
     format: edam:format_1929 # FASTA