X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/6093cec998ae55174ea6ca1e868be01c302c7294..7bdffd71945b5426581f197a8afc2e2fedbf1bd4:/RNA-Seq/README.md diff --git a/RNA-Seq/README.md b/RNA-Seq/README.md index 25677fd..d4e3c22 100644 --- a/RNA-Seq/README.md +++ b/RNA-Seq/README.md @@ -5,9 +5,22 @@ Workflows are written in CWL v1.2. (https://www.commonwl.org/) Subdirectories are: * cwl - contains CWL code for the demo * yml - contains YML inputs for cwl demo code -* docker - contains dockerfiles necessary to re-create any needed docker images To run the workflow: * arvados-cwl-runner --no-wait --project-uuid YOUR_PROJECT_UUID ./cwl/RNA-seq-wf.cwl ./yml/RNA-seq-wf.yml +About the Demo: +This demo is based on a workflow in the Introduction to RNA-seq using high-performance computing (HPC) lessons developed by members of the teaching team at the Harvard Chan Bioinformatics Core (HBC). The original training, which includes additional lectures about the biology of RNA-seq, can be found at here:https://github.com/hbctraining/Intro-to-rnaseq-hpc-O2. + +The data used in this demo can be found here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50499. Citation: Kenny PJ, Zhou H, Kim M, Skariah G et al. MOV10 and FMRP regulate AGO2 association with microRNA recognition elements. Cell Rep 2014 Dec 11;9(5):1729-1741. PMID: 25464849 + +Have questions about Arvados? +* https://arvados.org/ +* https://gitter.im/arvados/community + +Have questions about CWL? +* https://www.commonwl.org/ +* https://cwl.discourse.group/ +* https://gitter.im/common-workflow-language/common-workflow-language +