X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/56ae937c2f96a4ecc3f35f932d4e2246d76db309..611c455f8a94ab5dbd5c94415802b5c7fd009ffc:/WGS-processing/cwl/helper/fastqc.cwl diff --git a/WGS-processing/cwl/helper/fastqc.cwl b/WGS-processing/cwl/helper/fastqc.cwl index fffcdad..30193a1 100644 --- a/WGS-processing/cwl/helper/fastqc.cwl +++ b/WGS-processing/cwl/helper/fastqc.cwl @@ -14,11 +14,11 @@ hints: version: [ "0.11.9" ] inputs: - fastq1: + fastq1: type: File format: edam:format_1930 # FASTQ label: One of set of pair-end FASTQs (R1) - fastq2: + fastq2: type: File format: edam:format_1930 # FASTQ label: One of set of pair-end FASTQs (R2) @@ -36,7 +36,7 @@ outputs: outputBinding: glob: "*fastqc.zip" -baseCommand: fastqc +baseCommand: fastqc arguments: - $(inputs.fastq1.path)