X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/48f2b200216c57788577d45e080ab6bae212f90b..5080fcfd4a95af83c57b7a386b7ae9e0d38ef7c5:/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml

diff --git a/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml b/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml
index 4c42573..b46c700 100644
--- a/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml
+++ b/WGS-processing/yml/helper/gatk-haplotypecaller-with-interval.yml
@@ -1,10 +1,15 @@
 bam:
   class: File
+  format: edam:format_2572
   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam 
+
 reference:
   class: File
+  format: edam:format_1929
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+
 intervallist:
   class: File
   location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list
+
 sample: ERR1726424