X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/2f8908c77a8f9031d1069f00aeda40c12acf0fa1..a5a391be09c8e08c5b35ac0ba76f5d9634e6ed41:/WGS-processing/cwl/helper/report-wf.cwl

diff --git a/WGS-processing/cwl/helper/report-wf.cwl b/WGS-processing/cwl/helper/report-wf.cwl
index 0029018..6a0f18d 100644
--- a/WGS-processing/cwl/helper/report-wf.cwl
+++ b/WGS-processing/cwl/helper/report-wf.cwl
@@ -7,7 +7,7 @@ inputs:
     type: File
     format: edam:format_3016 # GVCF
     label: Gathered GVCF
-  samplename:
+  sample:
     type: string
     label: Sample Name
   clinvarvcf:
@@ -38,16 +38,14 @@ steps:
     run: gvcf-to-vcf.cwl
     in:
       gvcf: gvcf
-      samplename: samplename
+      sample: sample
     out: [vcf]
-
   annotate:
     run: annotate-vcf.cwl
     in:
       vcf: gvcf-to-vcf/vcf
       clinvarvcf: clinvarvcf
     out: [reporttxt]
-
   generate-report:
     run: generate-report.cwl
     in: