X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/1ab06313ca284ff3c75e0a086ce2c89af0fefa6d..e45856f97fb592f4deb3821a16d0c5be0b6ccf44:/blog-examples/debugging/fastq_example/fastqc_blog_broken.cwl

diff --git a/blog-examples/debugging/fastq_example/fastqc_blog_broken.cwl b/blog-examples/debugging/fastq_example/fastqc_blog_broken.cwl
new file mode 100644
index 0000000..8171be3
--- /dev/null
+++ b/blog-examples/debugging/fastq_example/fastqc_blog_broken.cwl
@@ -0,0 +1,29 @@
+cwlVersion: v1.1
+class: CommandLineTool
+label: Quality check on FASTQ
+
+requirements:
+  DockerRequirement:
+    dockerPull: biocontainers/fastqc:v0.11.9_cv6
+
+inputs:
+  fastq1:
+    type: Files 
+  fastq2:
+    type: File
+
+outputs:
+  out-html:
+    type: File
+    outputBinding:
+      glob: "*html"
+  out-zip:
+    type: File[]
+    outputBinding:
+      glob: "*fastqc.zip"
+
+baseCommand: fastqc
+
+arguments:
+  - $(inputs.fastq1.path)
+  - $(inputs.fastq2.path)