X-Git-Url: https://git.arvados.org/arvados-tutorial.git/blobdiff_plain/16ba895c32e0c95ae93bf76ee6e79fe0dbfacef9..ec300c76b5a3f927c3cd5035669b70847ade3854:/WGS-processing/cwl/wgs-processing-wf.cwl

diff --git a/WGS-processing/cwl/wgs-processing-wf.cwl b/WGS-processing/cwl/wgs-processing-wf.cwl
index 7a5e6de..8cbcf5e 100644
--- a/WGS-processing/cwl/wgs-processing-wf.cwl
+++ b/WGS-processing/cwl/wgs-processing-wf.cwl
@@ -22,6 +22,8 @@ inputs:
       - .sa
       - .fai
       - ^.dict
+  fullintervallist:
+    type: File
   knownsites:
     type: File
     format: edam:format_3016 # VCF
@@ -74,6 +76,7 @@ steps:
       fastq1: getfastq/fastq1
       fastq2: getfastq/fastq2
       reference: reference
+      fullintervallist: fullintervallist
       sample: getfastq/sample
       knownsites: knownsites
       scattercount: scattercount