Updating cwl

[arvados-tutorial.git] / cwl / bwa-gatk-wf.cwl

diff --git a/cwl/bwa-gatk-wf.cwl b/cwl/bwa-gatk-wf.cwl
index 6e1f326127baf9e2e016bfd2bad1c3c7d0b838ce..8069a1d31f3429107b6bffd78ff3e6a70390402a 100644 (file)
--- a/cwl/bwa-gatk-wf.cwl
+++ b/cwl/bwa-gatk-wf.cwl
@@ -25,7 +25,7 @@ outputs:
     outputSource: fastqc/out-zip 
   vcf:
     type: File
-    outputSource: vep/out-vcf
+    outputSource: haplotypecaller/vcf
 
 steps:
   fastqc: