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Updating cwl and yml for intervals and other changes
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
wgs-processing-wf.yml
diff --git
a/WGS-processing/yml/wgs-processing-wf.yml
b/WGS-processing/yml/wgs-processing-wf.yml
index f56f8cb3b2f506642e069c5da59c2a4b4df6f7c6..299a674eaa08056538c86d0745dabd6e80dea04f 100644
(file)
--- a/
WGS-processing/yml/wgs-processing-wf.yml
+++ b/
WGS-processing/yml/wgs-processing-wf.yml
@@
-1,7
+1,11
@@
reference:
class: File
format: edam:format_1929
reference:
class: File
format: edam:format_1929
- location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+ location: keep:5eac1d1c03ff6404226421a8d8351cf1+6133/GRCh38_no_alt_plus_hs38d1_analysis_set.fna
+
+fullintervallist:
+ class: File
+ location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
fastqdir:
class: Directory
fastqdir:
class: Directory
@@
-26,7
+30,7
@@
tailhtml:
format: edam:format_2331
location: ../src/annotation/tail.html
format: edam:format_2331
location: ../src/annotation/tail.html
-scattercount: '
32
'
+scattercount: '
20
'
knownsites:
class: File
knownsites:
class: File