Updating cwl and yml for intervals and other changes

[arvados-tutorial.git] / WGS-processing / yml / helper / scatter-gatk-wf-with-interval.yml

diff --git a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
index a6d741456fd98a7323e3bc80f12d9f4043f193c2..20b5a3b916449050ff08d56180db0b316a2b6b39 100644 (file)
--- a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
+++ b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
@@ -8,6 +8,10 @@ reference:
   format: edam:format_1929
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
 
+fullintervallist:
+  class: File
+  location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
+
 sample: ERR1726424
 
 scattercount: '32'