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Updating cwl and yml for intervals and other changes
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
helper
/
bwamem-gatk-report-wf.yml
diff --git
a/WGS-processing/yml/helper/bwamem-gatk-report-wf.yml
b/WGS-processing/yml/helper/bwamem-gatk-report-wf.yml
index 5e5be2c355fdd3475dc6d423394a49b5c954c251..8a92726272133c31fd75e54cf977830d127584aa 100644
(file)
--- a/
WGS-processing/yml/helper/bwamem-gatk-report-wf.yml
+++ b/
WGS-processing/yml/helper/bwamem-gatk-report-wf.yml
@@
-5,6
+5,10
@@
reference:
format: edam:format_1929
location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+fullintervallist:
+ class: File
+ location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
+
fastq1:
class: File
format: edam:format_1930