Updating cwl and yml for intervals and other changes

[arvados-tutorial.git] / WGS-processing / yml / helper / gatk-splitintervals.yml

diff --git a/WGS-processing/yml/helper/gatk-splitintervals.yml b/WGS-processing/yml/helper/gatk-splitintervals.yml
index 68dbcc4b4d1fb4cd4df9b4c08fc0b4bb35f26542..e78265c2635bc6a6d229602efd29f58a3cf8dacb 100644 (file)
--- a/WGS-processing/yml/helper/gatk-splitintervals.yml
+++ b/WGS-processing/yml/helper/gatk-splitintervals.yml
@@ -1,7 +1,13 @@
 reference:
   class: File
+  format: edam:format_1929
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
 
+fullintervallist:
+  class: File
+  location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
+
 sample: ERR1726424
 
 scattercount: "32"
+