Adding metadata and step renaming

[arvados-tutorial.git] / WGS-processing / cwl / helper / scatter-gatk-wf-with-interval.cwl

diff --git a/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl b/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
index 17bb13eb977846d37909e111188f5e2ebde3dbce..45653db5fb11364034e3ead3a1c5d8fc508afe3b 100644 (file)
--- a/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
+++ b/WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl
@@ -42,10 +42,10 @@ outputs:
   gatheredgvcf:
     type: File
     format: edam:format_3016 # GVCF
-    label: GVCF generated from GATK Haplotype Caller
+    label: Gathered GVCF 
     secondaryFiles: 
       - .tbi
-    outputSource: merge-GVCFs/gatheredgvcf
+    outputSource: gather-GVCFs/gatheredgvcf
     
 steps:
   splitintervals:
@@ -67,7 +67,7 @@ steps:
       intervallist: splitintervals/intervalfiles
     out: [gvcf]
 
-  merge-GVCFs:
+  gather-GVCFs:
     run: gather-array-vcf.cwl
     in:
       gvcfarray: recal-haplotypecaller/gvcf