requirements:
DockerRequirement:
dockerPull: biocontainers/fastqc:v0.11.9_cv6
+ InitialWorkDirRequirement:
+ listing:
+ - $(inputs.fastq1)
+ - $(inputs.fastq2)
hints:
SoftwareRequirement:
inputs:
fastq1:
- type: File
+ type: Files
label: One of set of pair-end FASTQs (R1)
+
fastq2:
type: File
label: One of set of pair-end FASTQs (R2)
arguments:
- "--noextract"
- - $(inputs.fastq1.path)
- - $(inputs.fastq2.path)
+ - $(inputs.fastq1.basename)
+ - $(inputs.fastq2.basename)
s:codeRepository: https://github.com/arvados/arvados-tutorial/blog-examples/debugging
s:license: https://www.gnu.org/licenses/agpl-3.0.en.html