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updating for metadata and yml to check command line cwl
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
helper
/
gatk-baserecalibrator-with-interval.yml
diff --git
a/WGS-processing/yml/helper/gatk-baserecalibrator.yml
b/WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
similarity index 75%
rename from
WGS-processing/yml/helper/gatk-baserecalibrator.yml
rename to
WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
index d4b3c50a6ffa7ebaeb74c94f1d4c966a7a5452f6..7e6b16a9696b70aa713f604c4b96bcbac81873c5 100644
(file)
--- a/
WGS-processing/yml/helper/gatk-baserecalibrator.yml
+++ b/
WGS-processing/yml/helper/gatk-baserecalibrator-with-interval.yml
@@
-12,3
+12,6
@@
knownsites1:
class: File
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
+intervallist:
+ class: File
+ location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list