cwlVersion: v1.1
class: CommandLineTool
-label: Sort BAM
+label: Sort BAM
requirements:
DockerRequirement:
hints:
arv:RuntimeConstraints:
- keep_cache: 9216
+ keep_cache: 9216
outputDirType: keep_output_dir
SoftwareRequirement:
packages:
version: [ "1.10" ]
inputs:
- bam:
+ bam:
type: File
format: edam:format_2572 # BAM
label: Alignments in BAM format
sortedbam:
type: File
format: edam:format_2572 # BAM
- label: Sorted BAM
+ label: Sorted BAM
outputBinding:
glob: "*sorted.bam"
arv: "http://arvados.org/cwl#"
cwltool: "http://commonwl.org/cwltool#"
-$schemas:
- - https://schema.org/version/latest/schema.rdf
- - http://edamontology.org/EDAM_1.18.owl
+#$schemas:
+# - https://schema.org/version/latest/schema.rdf
+# - http://edamontology.org/EDAM_1.18.owl