Adding labels and formats to cwl

[arvados-tutorial.git] / WGS-processing / cwl / helper / bwamem-samtools-view.cwl

diff --git a/WGS-processing/cwl/helper/bwamem-samtools-view.cwl b/WGS-processing/cwl/helper/bwamem-samtools-view.cwl
index 689bf393906ccbb5e50353db21d4e6d53a236ca0..c539325544572fc3968cb979fe4617723f26601a 100644 (file)
--- a/WGS-processing/cwl/helper/bwamem-samtools-view.cwl
+++ b/WGS-processing/cwl/helper/bwamem-samtools-view.cwl
@@ -1,6 +1,7 @@
 cwlVersion: v1.1
 class: CommandLineTool
-label: Realigning fastqs and converting output to bam
+label: Aligning fastqs with BWA
+
 $namespaces:
   arv: "http://arvados.org/cwl#"
   cwltool: "http://commonwl.org/cwltool#"
@@ -10,11 +11,12 @@ requirements:
     dockerPull: curii/bwa-samtools-picard
   ShellCommandRequirement: {}
   ResourceRequirement:
-    ramMin: 26000
+    ramMin: 50000
     coresMin: 16 
 
 hints:
   arv:RuntimeConstraints:
+    keep_cache: 1024 
     outputDirType: keep_output_dir
 
 inputs: