--- /dev/null
+cwlVersion: v1.2
+class: CommandLineTool
+
+inputs:
+ gtf: File
+ counts_input_bam:
+ - File
+ - File[]
+
+baseCommand: featureCounts
+
+arguments: [-T, $(runtime.cores),
+ -a, $(inputs.gtf),
+ -o, featurecounts.tsv,
+ $(inputs.counts_input_bam)]
+
+outputs:
+ featurecounts:
+ type: File
+ outputBinding:
+ glob: featurecounts.tsv
+
+hints:
+ DockerRequirement:
+ dockerPull: quay.io/biocontainers/subread:1.5.0p3--0