Updating yml

[arvados-tutorial.git] / yml / bwa-gatk-wf-report.yml

diff --git a/yml/bwa-gatk-wf-report.yml b/yml/bwa-gatk-wf-report.yml
new file mode 100644 (file)
index 0000000..35a0998
--- /dev/null
+++ b/yml/bwa-gatk-wf-report.yml
@@ -0,0 +1,29 @@
+sample: hu297A5D_AE2CH6SK4DG
+
+reference:
+  class: File
+  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+
+fastq1:
+  class: File
+  location: keep:06a9452462b67765a81352638a610a5a+198/hu297A5D_AE2CH6SK4DG-EXT_100000_R1.fastq.gz
+
+fastq2:
+  class: File
+  location: keep:06a9452462b67765a81352638a610a5a+198/hu297A5D_AE2CH6SK4DG-EXT_100000_R2.fastq.gz
+
+clinvarvcf:
+  class: File
+  location: keep:80aadf801bccd1e1d838b07d46d4de63+1712/38/clinvar.vcf.gz
+
+reportfunc:
+  class: File
+  location: ../src/annotation/generatereport.py
+
+headhtml:
+  class: File
+  location: /data-sdd/pgp/arvados-tutorial/src/annotation/head.html
+
+tailhtml:
+  class: File
+  location: /data-sdd/pgp/arvados-tutorial/src/annotation/tail.html