sample:
type: string
label: Sample Name
- knownsites1:
+ knownsites:
type: File
format: edam:format_3016 # VCF
label: VCF of known polymorphic sites for BQSR
- prefix: "-I"
valueFrom: $(inputs.bam.basename)
- prefix: "--known-sites"
- valueFrom: $(inputs.knownsites1)
+ valueFrom: $(inputs.knownsites)
- prefix: "-L"
valueFrom: $(inputs.intervallist)
- prefix: "-O"