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Switching variable knownsites1 to knownsites
[arvados-tutorial.git] / WGS-processing / cwl / helper / bwamem-gatk-report-wf.cwl
diff --git a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index 86d1e1051114ca42f41e956aae55c1d3d9d0028c..56efe6545d928b4fafdb6b79bce6f8a821761e44 100644 (file)
--- a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@ -113,7 +113,7 @@ steps:
       bam: samtools-index/indexedbam
       sample: sample
       scattercount: scattercount
       bam: samtools-index/indexedbam
       sample: sample
       scattercount: scattercount
-      knownsites1: knownsites
+      knownsites: knownsites
     out: [gatheredgvcf]
   generate-report:
     run: report-wf.cwl
     out: [gatheredgvcf]
   generate-report:
     run: report-wf.cwl