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Switching variable knownsites1 to knownsites
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
bwamem-gatk-report-wf.cwl
diff --git
a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index 86d1e1051114ca42f41e956aae55c1d3d9d0028c..56efe6545d928b4fafdb6b79bce6f8a821761e44 100644
(file)
--- a/
WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/
WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@
-113,7
+113,7
@@
steps:
bam: samtools-index/indexedbam
sample: sample
scattercount: scattercount
- knownsites
1
: knownsites
+ knownsites: knownsites
out: [gatheredgvcf]
generate-report:
run: report-wf.cwl