Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>

[arvados-tutorial.git] / docker / bwa / Dockerfile

diff --git a/docker/bwa/Dockerfile b/docker/bwa/Dockerfile
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+FROM arvados/jobs
+MAINTAINER Bryan Cosca <bcosca@curii.com>
+
+USER root
+
+RUN apt-get update -qy
+RUN apt-get install -qy build-essential wget cmake zlib1g-dev python-pip unzip libbz2-dev liblzma-dev libcurl4-openssl-dev libncurses-dev
+
+RUN mkdir -p /usr/share/man/man1
+RUN apt-get install -qy default-jdk
+
+ADD bwa-0.7.17.tar.bz2 /
+WORKDIR bwa-0.7.17
+RUN make
+
+ADD samtools-1.10.tar.bz2 /
+WORKDIR /samtools-1.10
+RUN ./configure && make && make install
+
+ADD picard.jar /
+
+WORKDIR /
+
+# ADD bcftools-1.10.2.tar.bz2 /
+