Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>

[arvados-tutorial.git] / docker / bam2fastq / Dockerfile

diff --git a/docker/bam2fastq/Dockerfile b/docker/bam2fastq/Dockerfile
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+FROM arvados/jobs
+MAINTAINER Bryan Cosca <bcosca@curii.com>
+
+USER root
+
+RUN apt-get update -qy
+RUN apt-get install -qy build-essential wget cmake zlib1g-dev python-pip unzip libbz2-dev liblzma-dev libcurl4-openssl-dev libncurses-dev git
+
+RUN git clone --recursive https://github.com/jts/bam2fastq
+WORKDIR /bam2fastq
+RUN make
+
+WORKDIR /
+