- .sa
- .fai
- ^.dict
- sample:
- type: string
- label: Sample name
knownsites:
type: File
format: edam:format_3016 # VCF
label: Function used to create HTML report
headhtml:
type: File
- format: edam:format_1964 # HTML
+ format: edam:format_2331# HTML
label: Header for HTML report
tailhtml:
type: File
- format: edam:format_1964 # HTML
+ format: edam:format_2331 # HTML
label: Footer for HTML report
outputs:
type: File[]
outputSource: bwamem-gatk-report/gvcf
format: edam:format_3016 # GVCF
- label: GVCFs generated from sets of fastqs
-
+ label: GVCFs generated from GATK
report:
type: File[]
outputSource: bwamem-gatk-report/report