Rearranging for clarity

[arvados-tutorial.git] / yml / bwa-gatk-report-wf-UK.yml

diff --git a/yml/bwa-gatk-report-wf-UK.yml b/yml/bwa-gatk-report-wf-UK.yml
deleted file mode 100644 (file)
index 074d16a..0000000
--- a/yml/bwa-gatk-report-wf-UK.yml
+++ /dev/null
@@ -1,35 +0,0 @@
-sample: ERR1726424
-
-reference:
-  class: File
-  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
-
-fastq1:
-  class: File
-  location: keep:c96565a96cd428fe92bf70e97488bd80+21857/ERR1726424_1.fastq/ERR1726424_1.fastq.gz 
-
-fastq2:
-  class: File
-  location: keep:0ea6e3aaa6ead18a2cc4ba67a22939e9+25007/ERR1726424_2.fastq/ERR1726424_2.fastq.gz
-
-clinvarvcf:
-  class: File
-  location: keep:242ba3b9049aee86ab2c72db4f3b2822+223/38/clinvar.vcf.gz
-
-reportfunc:
-  class: File
-  location: ../src/annotation/generatereport.py
-
-headhtml:
-  class: File
-  location: /data-sdd/pgp/arvados-tutorial/src/annotation/head.html
-
-tailhtml:
-  class: File
-  location: /data-sdd/pgp/arvados-tutorial/src/annotation/tail.html
-
-scattercount: '32'
-
-knownsites:
-  class: File
-  location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz