Rearranging for clarity

[arvados-tutorial.git] / cwl / helper / report-wf.cwl

diff --git a/cwl/helper/report-wf.cwl b/cwl/helper/report-wf.cwl
deleted file mode 100644 (file)
index de8ab3f..0000000
--- a/cwl/helper/report-wf.cwl
+++ /dev/null
@@ -1,45 +0,0 @@
-cwlVersion: v1.1
-class: Workflow
-
-inputs:
-  gvcf: 
-    type: File
-  samplename:
-    type: string
-  clinvarvcf:
-    type: File
-  reportfunc:
-    type: File
-  headhtml:
-    type: File
-  tailhtml:   
-    type: File
-
-outputs:
-  report:
-    type: File
-    outputSource: generate-report/report
-
-steps:
-  gvcf-to-vcf:
-    run: gvcf-to-vcf.cwl
-    in:
-      gvcf: gvcf
-      samplename: samplename
-    out: [vcf]
-
-  annotate:
-    run: annotate-vcf.cwl
-    in:
-      vcf: gvcf-to-vcf/vcf
-      clinvarvcf: clinvarvcf
-    out: [reporttxt]
-
-  generate-report:
-    run: generate-report.cwl
-    in:
-      reportfunc: reportfunc
-      sampletxt: annotate/reporttxt
-      headhtml: headhtml
-      tailhtml: tailhtml
-    out: [report]