Rearranging for clarity

[arvados-tutorial.git] / cwl / helper / getgvcfs.cwl

diff --git a/cwl/helper/getgvcfs.cwl b/cwl/helper/getgvcfs.cwl
deleted file mode 100644 (file)
index e3a7022..0000000
--- a/cwl/helper/getgvcfs.cwl
+++ /dev/null
@@ -1,37 +0,0 @@
-$namespaces:
-  arv: "http://arvados.org/cwl#"
-  cwltool: "http://commonwl.org/cwltool#"
-class: ExpressionTool
-cwlVersion: v1.1
-label: Create array of gvcfs to process
-requirements:
-  InlineJavascriptRequirement: {}
-inputs:
-  gvcfdir:
-    type: Directory
-    label: Input directory of gvcfs
-    loadListing: 'shallow_listing' 
-outputs:
-  sampleinput: 
-    type: string
-expression: |
-  ${
-    var samples = [];
-    for (var i = 0; i < inputs.gvcfdir.listing.length; i++) {
-      var name = inputs.gvcfdir.listing[i];
-      if (name.nameext ==='.gz' ) {
-        samples.push(name.basename);
-      }
-    }
-    samples = samples.sort();
-    var sampleinput = [];
-   
-    for (var i = 0; i < samples.length; i++) {
-     var s1 = samples[i];
-     sampleinput = sampleinput + "-I " + s1 + " "
-    }
-
-
-    return {"sampleinput": sampleinput};
-
-  }