Rearranging for clarity

[arvados-tutorial.git] / cwl / helper / fastqc.cwl

diff --git a/cwl/helper/fastqc.cwl b/cwl/helper/fastqc.cwl
deleted file mode 100644 (file)
index 888ba92..0000000
--- a/cwl/helper/fastqc.cwl
+++ /dev/null
@@ -1,31 +0,0 @@
-cwlVersion: v1.1
-class: CommandLineTool
-label: Quality check on fastq data using FastQC
-
-requirements:
-  DockerRequirement:
-    dockerPull: curii/fastqc
-  InitialWorkDirRequirement:
-    listing:
-      - $(inputs.fastq1)
-      - $(inputs.fastq2)
-
-inputs:
-  fastq1: File
-  fastq2: File
-
-outputs:
-  out-html:
-    type: File[]
-    outputBinding:
-      glob: "*html"
-  out-zip:
-    type: File[]
-    outputBinding:
-      glob: "*fastqc.zip"
-
-baseCommand: perl
-arguments:
-  - /FastQC/fastqc
-  - $(inputs.fastq1.basename)
-  - $(inputs.fastq2.basename)