Rearranging for clarity

[arvados-tutorial.git] / WGS-processing / yml / bwa-gatk-wf-report.yml

diff --git a/WGS-processing/yml/bwa-gatk-wf-report.yml b/WGS-processing/yml/bwa-gatk-wf-report.yml
new file mode 100644 (file)
index 0000000..7889a82
--- /dev/null
+++ b/WGS-processing/yml/bwa-gatk-wf-report.yml
@@ -0,0 +1,29 @@
+sample: WGC071838D
+
+reference:
+  class: File
+  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+
+fastq1:
+  class: File
+  location: keep:24df1ea93ad5275aa511462ea85b0548+20283/WGC071838D_R1.fastq.gz
+
+fastq2:
+  class: File
+  location: keep:24df1ea93ad5275aa511462ea85b0548+20283/WGC071838D_R2.fastq.gz
+
+clinvarvcf:
+  class: File
+  location: keep:242ba3b9049aee86ab2c72db4f3b2822+223/38/clinvar.vcf.gz
+
+reportfunc:
+  class: File
+  location: ../src/annotation/generatereport.py
+
+headhtml:
+  class: File
+  location: /data-sdd/pgp/arvados-tutorial/src/annotation/head.html
+
+tailhtml:
+  class: File
+  location: /data-sdd/pgp/arvados-tutorial/src/annotation/tail.html