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Updating docker reference
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
bwamem-samtools-view.cwl
diff --git
a/WGS-processing/cwl/helper/bwamem-samtools-view.cwl
b/WGS-processing/cwl/helper/bwamem-samtools-view.cwl
index 32eb5ce0ab53cfbc4b421905ba59bff2b52df716..cf9210cc2dca7078fe22e27cd0605cb27332db9f 100644
(file)
--- a/
WGS-processing/cwl/helper/bwamem-samtools-view.cwl
+++ b/
WGS-processing/cwl/helper/bwamem-samtools-view.cwl
@@
-4,16
+4,16
@@
label: Align FASTQs with BWA
requirements:
DockerRequirement:
requirements:
DockerRequirement:
- dockerPull: curii/bwa-samtools
-picard
+ dockerPull: curii/bwa-samtools
ShellCommandRequirement: {}
ShellCommandRequirement: {}
- ResourceRequirement:
- ramMin: 50000
- coresMin: 16
hints:
arv:RuntimeConstraints:
keep_cache: 1024
outputDirType: keep_output_dir
hints:
arv:RuntimeConstraints:
keep_cache: 1024
outputDirType: keep_output_dir
+ ResourceRequirement:
+ ramMin: 50000
+ coresMin: 16
SoftwareRequirement:
packages:
BWA:
SoftwareRequirement:
packages:
BWA: