Updating yml for 2 vcfs of known sites

[arvados-tutorial.git] / WGS-processing / yml / helper / gatk-wf-with-interval.yml

diff --git a/WGS-processing/yml/helper/gatk-wf-with-interval.yml b/WGS-processing/yml/helper/gatk-wf-with-interval.yml
index e1e2b942056cbd52b23e3bdca77937ddbcec3436..acff1edceab7cb06b9e17f7cb37bfa16503f8dfb 100644 (file)
--- a/WGS-processing/yml/helper/gatk-wf-with-interval.yml
+++ b/WGS-processing/yml/helper/gatk-wf-with-interval.yml
@@ -1,9 +1,11 @@
 bam:
   class: File
+  format: edam:format_2572
   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam 
 
 reference:
   class: File
+  format: edam:format_1929
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
 
 intervallist:
@@ -12,6 +14,12 @@ intervallist:
 
 sample: ERR1726424
 
-knownsites:
+knownsites1:
   class: File
+  format: edam:format_3016
+  location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf
+
+knownsites2:
+  class: File
+  format: edam:format_3016
   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz