adding base recalibrator yml and updating bwamem yml

[arvados-tutorial.git] / yml / bwamem-samtools-sort.yml

diff --git a/yml/bwamem-samtools-sort.yml b/yml/bwamem-samtools-sort.yml
new file mode 100644 (file)
index 0000000..91e5357
--- /dev/null
+++ b/yml/bwamem-samtools-sort.yml
@@ -0,0 +1,10 @@
+reference:
+  class: File
+  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+fastq1:
+  class: File
+  location: keep:c96565a96cd428fe92bf70e97488bd80+21857/ERR1726424_1.fastq/ERR1726424_1.fastq.gz  
+fastq2:
+  class: File
+  location: keep:0ea6e3aaa6ead18a2cc4ba67a22939e9+25007/ERR1726424_2.fastq/ERR1726424_2.fastq.gz
+sample: ERR1726424