-Version: v1.1
+cwlVersion: v1.1
class: Workflow
requirements:
run: ./helper/getfastq.cwl
in:
fastqdir: fastqdir
- out: [fastq1, fastq2]
+ out: [fastq1, fastq2, sample]
bwamem-gatk-report:
run: ./helper/bwamem-gatk-report-wf.cwl
- scatter: [fastq1, fastq2]
+ scatter: [fastq1, fastq2, sample]
scatterMethod: dotproduct
in:
fastq1: getfastq/fastq1
fastq2: getfastq/fastq2
reference: reference
- sample: sample
+ sample: getfastq/sample
knownsites: knownsites
scattercount: scattercount
clinvarvcf: clinvarvcf
headhtml: headhtml
tailhtml: tailhtml
out: [qc-html,qc-zip,gvcf,report]
+
+s:codeRepository: https://github.com/arvados/arvados-tutorial
+s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
+
+$namespaces:
+ s: https://schema.org/