bam:
class: File
+ format: edam:format_2572
location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam
reference:
class: File
+ format: edam:format_1929
location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+fullintervallist:
+ class: File
+ location: /data-sdd/pgp/testdata/full-noalt-scattered.interval_list
+
sample: ERR1726424
scattercount: '32'
knownsites1:
class: File
+ format: edam:format_3016
+ location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.dbsnp138.vcf
+
+knownsites2:
+ class: File
+ format: edam:format_3016
location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz