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Fixing labels for knownsites
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
gatk-wf-with-interval.cwl
diff --git
a/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
b/WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
index d9023c92186ca6fda034cbf4552accdb5c069364..b3ea17f6eefda46ac0616ae4eeee0d4507768d73 100644
(file)
--- a/
WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
+++ b/
WGS-processing/cwl/helper/gatk-wf-with-interval.cwl
@@
-30,13
+30,13
@@
inputs:
knownsites1:
type: File
format: edam:format_3016 # VCF
knownsites1:
type: File
format: edam:format_3016 # VCF
- label: VCF of known
polymorphic
sites for BQSR
+ label: VCF of known
SNPS
sites for BQSR
secondaryFiles:
- .idx
knownsites2:
type: File
format: edam:format_3016 # VCF
secondaryFiles:
- .idx
knownsites2:
type: File
format: edam:format_3016 # VCF
- label: VCF of known
polymorphic
sites for BQSR
+ label: VCF of known
indel
sites for BQSR
secondaryFiles:
- .tbi
intervallist:
secondaryFiles:
- .tbi
intervallist: