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Fixing labels for knownsites
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
gatk-baserecalibrator-with-interval.cwl
diff --git
a/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
b/WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
index 2de30a62b88d0a0923b6951eaa05b9cf31c0ddc2..ea00e91a5b4d8ce3e93ded400a85927973f37281 100644
(file)
--- a/
WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
+++ b/
WGS-processing/cwl/helper/gatk-baserecalibrator-with-interval.cwl
@@
-44,13
+44,13
@@
inputs:
knownsites1:
type: File
format: edam:format_3016 # VCF
knownsites1:
type: File
format: edam:format_3016 # VCF
- label: VCF of known
polymorphic
sites for BQSR
+ label: VCF of known
SNPS
sites for BQSR
secondaryFiles:
- .idx
knownsites2:
type: File
format: edam:format_3016 # VCF
secondaryFiles:
- .idx
knownsites2:
type: File
format: edam:format_3016 # VCF
- label: VCF of known
polymorphic
sites for BQSR
+ label: VCF of known
indel
sites for BQSR
secondaryFiles:
- .tbi
intervallist:
secondaryFiles:
- .tbi
intervallist: