Fixing labels for knownsites

[arvados-tutorial.git] / WGS-processing / cwl / helper / bwamem-gatk-report-wf.cwl

diff --git a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
index 76e4798bf270315a57d10a2363aa203487feedc1..41c9130e923c35cd86164f404a38db4165225eb4 100644 (file)
--- a/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
+++ b/WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl
@@ -35,15 +35,15 @@ inputs:
   knownsites1:
     type: File
     format: edam:format_3016 # VCF
   knownsites1:
     type: File
     format: edam:format_3016 # VCF

-    label: VCF of known polymorphic sites for BQSR
+    label: VCF of known SNPS sites for BQSR

     secondaryFiles:
     secondaryFiles:

-      - .idx 
+      - .idx

   knownsites2:
     type: File
     format: edam:format_3016 # VCF
   knownsites2:
     type: File
     format: edam:format_3016 # VCF

-    label: VCF of known polymorphic sites for BQSR
+    label: VCF of known indel sites for BQSR

     secondaryFiles:
     secondaryFiles:

-      - .tbi  
+      - .tbi

   scattercount: 
     type: string
     label: Desired split for variant calling
   scattercount: 
     type: string
     label: Desired split for variant calling