Adding yml files for gathering and intervals

[arvados-tutorial.git] / yml / gatk-applyBQSR.yml

diff --git a/yml/gatk-applyBQSR.yml b/yml/gatk-applyBQSR.yml
new file mode 100644 (file)
index 0000000..0241acd
--- /dev/null
+++ b/yml/gatk-applyBQSR.yml
@@ -0,0 +1,13 @@
+bam:
+  class: File
+  location: keep:79407f4f0d46a44fcc9c377461ee85fc+53752/marked_dupsERR1726424.sorted.bam
+
+reference:
+  class: File
+  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+
+sample: ERR1726424
+
+recaltable: 
+  class: File
+  location: keep:fdce030a5036edb9b821222e316ee706+143/ERR1726424_recal_data.table