Adding yml files for gathering and intervals

[arvados-tutorial.git] / yml / gather-vcf.yml

diff --git a/yml/gather-vcf.yml b/yml/gather-vcf.yml
new file mode 100644 (file)
index 0000000..779a97c
--- /dev/null
+++ b/yml/gather-vcf.yml
@@ -0,0 +1,17 @@
+reference:
+  class: File
+  location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
+sample: ERR1726424
+gvcflist:
+  class: File
+  location: /data-sdd/pgp/arvados-tutorial/src/variantcalling/sample-files.list
+gvcf1:
+  class: File
+  location: keep:dec5da8ebcda12b3eece8705a4391f55+2510/ERR1726424.gatk.g.vcf.gz
+
+gvcf2:
+  class: File
+  location: keep:dec5da8ebcda12b3eece8705a4391f55+2510/ERR1726424.gatk.g.vcf_10.gz
+
+
+