Adding metadata

[arvados-tutorial.git] / WGS-processing / cwl / helper / report-wf.cwl

diff --git a/WGS-processing/cwl/helper/report-wf.cwl b/WGS-processing/cwl/helper/report-wf.cwl
index 30857f46e7eaeb1cfa285d16dc1bff19b786ddfb..0029018394d7aa1c2dd170860196efef9ed39a3a 100644 (file)
--- a/WGS-processing/cwl/helper/report-wf.cwl
+++ b/WGS-processing/cwl/helper/report-wf.cwl
@@ -5,20 +5,32 @@ label: Report generation workflow
 inputs:
   gvcf: 
     type: File
+    format: edam:format_3016 # GVCF
+    label: Gathered GVCF
   samplename:
     type: string
+    label: Sample Name
   clinvarvcf:
     type: File
+    format: edam:format_3016 # VCF
+    label: Reference VCF for ClinVar
   reportfunc:
     type: File
+    label: Function used to create HTML report
   headhtml:
     type: File
+    format: edam:format_2331# HTML
+    label: Header for HTML report
   tailhtml:   
     type: File
+    format: edam:format_2331 # HTML
+    label: Footer for HTML report
 
 outputs:
   report:
     type: File
+    format: edam:format_1964 # HTML
+    label: ClinVar variant report
     outputSource: generate-report/report
 
 steps:
@@ -44,3 +56,14 @@ steps:
       headhtml: headhtml
       tailhtml: tailhtml
     out: [report]
+
+s:codeRepository: https://github.com/arvados/arvados-tutorial
+s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
+
+$namespaces:
+ s: https://schema.org/
+ edam: http://edamontology.org/
+
+$schemas:
+ - https://schema.org/version/latest/schema.rdf
+ - http://edamontology.org/EDAM_1.18.owl