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updating yml
[arvados-tutorial.git]
/
WGS-processing
/
yml
/
wgs-processing-wf.yml
diff --git
a/WGS-processing/yml/wgs-processing-wf.yml
b/WGS-processing/yml/wgs-processing-wf.yml
index 49ac46d80ed6440bc6c9fa84019b31130c7f46d8..2e9cc446123ba1fe0cf2fd2c6e3adb9c611ac25f 100644
(file)
--- a/
WGS-processing/yml/wgs-processing-wf.yml
+++ b/
WGS-processing/yml/wgs-processing-wf.yml
@@
-1,20
+1,20
@@
reference:
class: File
format: edam:format_1929
reference:
class: File
format: edam:format_1929
- location: keep:
5eac1d1c03ff6404226421a8d8351cf1+6133
/GRCh38_no_alt_plus_hs38d1_analysis_set.fna
+ location: keep:
18657d75efb4afd31a14bb204d073239+13611
/GRCh38_no_alt_plus_hs38d1_analysis_set.fna
fullintervallist:
class: File
fullintervallist:
class: File
- location:
/data-sdd/pgp/testdata
/full-noalt-scattered.interval_list
+ location:
keep:18657d75efb4afd31a14bb204d073239+13611
/full-noalt-scattered.interval_list
fastqdir:
class: Directory
fastqdir:
class: Directory
- location: keep:
5e1324428f93c5e41aeb3d7b676de34c+186978
+ location: keep:
a146a06222f9a66b7d141e078fc67660+376237
clinvarvcf:
class: File
format: edam:format_3016
clinvarvcf:
class: File
format: edam:format_3016
- location: keep:
242ba3b9049aee86ab2c72db4f3b2822+223/38
/clinvar.vcf.gz
+ location: keep:
18657d75efb4afd31a14bb204d073239+13611
/clinvar.vcf.gz
reportfunc:
class: File
reportfunc:
class: File
@@
-35,9
+35,9
@@
scattercount: '20'
knownsites1:
class: File
format: edam:format_3016
knownsites1:
class: File
format: edam:format_3016
- location: keep:
7c0b13bda857fa15d88c1039182f69d5+8052
/Homo_sapiens_assembly38.dbsnp138.vcf
+ location: keep:
18657d75efb4afd31a14bb204d073239+13611
/Homo_sapiens_assembly38.dbsnp138.vcf
knownsites2:
class: File
format: edam:format_3016
knownsites2:
class: File
format: edam:format_3016
- location: keep:
7c0b13bda857fa15d88c1039182f69d5+8052
/Homo_sapiens_assembly38.known_indels.vcf.gz
+ location: keep:
18657d75efb4afd31a14bb204d073239+13611
/Homo_sapiens_assembly38.known_indels.vcf.gz