Adding modified code to select variants and gather arrays

[arvados-tutorial.git] / cwl / helper / gatk-haplotypecaller-with-interval.cwl

diff --git a/cwl/helper/gatk-haplotypecaller-with-interval.cwl b/cwl/helper/gatk-haplotypecaller-with-interval.cwl
index 3e0b53d3e53a2a22fb0f7e616b0a78c7316a2aca..88c78e04654581896209c162a7c0dc7101519887 100644 (file)
--- a/cwl/helper/gatk-haplotypecaller-with-interval.cwl
+++ b/cwl/helper/gatk-haplotypecaller-with-interval.cwl
@@ -40,6 +40,8 @@ inputs:
 outputs:
   gvcf:
     type: File
+    secondaryFiles:
+      - .tbi
     outputBinding:
       glob: "*vcf.gz"