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Updating to take a directory
[arvados-tutorial.git]
/
RNA-Seq
/
cwl
/
helper
/
STAR-Align.cwl
diff --git
a/RNA-Seq/cwl/helper/STAR-Align.cwl
b/RNA-Seq/cwl/helper/STAR-Align.cwl
index 24a640ba5162932c7bcfcb0f1120892bfd6c73b7..fabb73a2030773da33286a896d1205775e997f9e 100755
(executable)
--- a/
RNA-Seq/cwl/helper/STAR-Align.cwl
+++ b/
RNA-Seq/cwl/helper/STAR-Align.cwl
@@
-19,7
+19,6
@@
inputs:
prefix: "--genomeDir"
ForwardReads:
prefix: "--genomeDir"
ForwardReads:
- format: edam:format_1930 # FASTQ
type:
- File
- File[]
type:
- File
- File[]
@@
-29,7
+28,6
@@
inputs:
position: 1
# If paired-end reads (like Illumina), both 1 and 2 must be provided.
ReverseReads:
position: 1
# If paired-end reads (like Illumina), both 1 and 2 must be provided.
ReverseReads:
- format: edam:format_1930 # FASTQ
type:
- "null"
- File
type:
- "null"
- File
@@
-248,8
+246,3
@@
outputs:
type: ["null", File]
outputBinding:
glob: "Unmapped.out*"
type: ["null", File]
outputBinding:
glob: "Unmapped.out*"
-
-$namespaces:
- edam: https://edamontology.org/
-$schemas:
- - https://edamontology.org/EDAM_1.18.owl