Updating to take a directory

[arvados-tutorial.git] / RNA-Seq / cwl / helper / STAR-Align.cwl

diff --git a/RNA-Seq/cwl/helper/STAR-Align.cwl b/RNA-Seq/cwl/helper/STAR-Align.cwl
index 24a640ba5162932c7bcfcb0f1120892bfd6c73b7..fabb73a2030773da33286a896d1205775e997f9e 100755 (executable)
--- a/RNA-Seq/cwl/helper/STAR-Align.cwl
+++ b/RNA-Seq/cwl/helper/STAR-Align.cwl
@@ -19,7 +19,6 @@ inputs:
       prefix: "--genomeDir"
 
   ForwardReads:
-    format: edam:format_1930  # FASTQ
     type:
      - File
      - File[]
@@ -29,7 +28,6 @@ inputs:
       position: 1
   # If paired-end reads (like Illumina), both 1 and 2 must be provided.
   ReverseReads:
-    format: edam:format_1930  # FASTQ
     type:
      - "null"
      - File
@@ -248,8 +246,3 @@ outputs:
     type: ["null", File]
     outputBinding:
       glob: "Unmapped.out*"
-
-$namespaces:
-  edam: https://edamontology.org/
-$schemas:
-  - https://edamontology.org/EDAM_1.18.owl