projects
/
arvados-tutorial.git
/ blobdiff
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Updating to take a directory
[arvados-tutorial.git]
/
RNA-Seq
/
cwl
/
RNA-seq-wf.cwl
diff --git
a/RNA-Seq/cwl/RNA-seq-wf.cwl
b/RNA-Seq/cwl/RNA-seq-wf.cwl
index 07386c1b5841d57c3a4316a70ab0179aa9125012..555e5e2cc1aa17875ff56141b68060af96ac5bdd 100644
(file)
--- a/
RNA-Seq/cwl/RNA-seq-wf.cwl
+++ b/
RNA-Seq/cwl/RNA-seq-wf.cwl
@@
-13,7
+13,7
@@
steps:
scatter: fq
in:
fq:
scatter: fq
in:
fq:
- valueFrom: $(inputs.fq.listing)
+ valueFrom: $(inputs.fq
dir
.listing)
genome: genome
gtf: gtf
out: [qc_html, bam_sorted_indexed]
genome: genome
gtf: gtf
out: [qc_html, bam_sorted_indexed]
@@
-32,7
+32,7
@@
steps:
run: helper/subdirs.cwl
in:
fq:
run: helper/subdirs.cwl
in:
fq:
- valueFrom: $(inputs.fq.listing)
+ valueFrom: $(inputs.fq
dir
.listing)
bams: alignment/bam_sorted_indexed
qc: alignment/qc_html
out: [dirs]
bams: alignment/bam_sorted_indexed
qc: alignment/qc_html
out: [dirs]
@@
-49,6
+49,7
@@
outputs:
requirements:
SubworkflowFeatureRequirement: {}
ScatterFeatureRequirement: {}
requirements:
SubworkflowFeatureRequirement: {}
ScatterFeatureRequirement: {}
+ StepInputExpressionRequirement: {}
hints:
LoadListingRequirement:
hints:
LoadListingRequirement: