-$namespaces:
- arv: "http://arvados.org/cwl#"
- cwltool: "http://commonwl.org/cwltool#"
class: ExpressionTool
cwlVersion: v1.1
-label: Create array of gvcfs to process
+label: Find matching FASTQ pairs
requirements:
InlineJavascriptRequirement: {}
+
inputs:
fastqdir:
type: Directory
- label: Input directory of fastqs
- loadListing: 'shallow_listing'
+ label: Input directory of FASTQs
+ loadListing: 'shallow_listing'
+
outputs:
fastq1:
type: File[]
+ format: edam:format_1930 # FASTQ
+ label: Half set of pair-end FASTQs (R1)
fastq2:
type: File[]
+ format: edam:format_1930 # FASTQ
+ label: Half set of pair-end FASTQs (R2)
sample:
type: string[]
+ label: Sample Names
+
expression: |
${function compare(a, b) {
var baseA = a.basename;
return {"fastq1": fastq1, "fastq2": fastq2, "sample": sample};
}
+
+
+s:codeRepository: https://github.com/arvados/arvados-tutorial
+s:license: https://www.gnu.org/licenses/agpl-3.0.en.html
+
+$namespaces:
+ s: https://schema.org/
+ edam: http://edamontology.org/
+ arv: "http://arvados.org/cwl#"
+ cwltool: "http://commonwl.org/cwltool#"
+
+#$schemas:
+# - https://schema.org/version/latest/schema.rdf
+# - http://edamontology.org/EDAM_1.18.owl