cleaning up src directory and updating head.html

[arvados-tutorial.git] / src / annotation / generatereport.py

diff --git a/src/annotation/new/generatereport.py b/src/annotation/generatereport.py
similarity index 93%
rename from src/annotation/new/generatereport.py
rename to src/annotation/generatereport.py
index 6f39bb5bdb2f0c403bb66a349831e52a92304829..df9d9ad3267960806e06cb60ab2e76af962acc5b 100644 (file)
--- a/src/annotation/new/generatereport.py
+++ b/src/annotation/generatereport.py
@@ -43,7 +43,8 @@ def generatereport():
     reportdata.Zygosity[idxHET]='HET'
 
     # creating url from variant ID
-    reportdata['URL'] = '<a href="http://www.mywebsite.com/about.html">About</a>'
+    clinvarURL =  "https://www.ncbi.nlm.nih.gov/clinvar/variation/" 
+    reportdata['URL'] = '<a href=' + clinvarURL + reportdata['Variant ID'].apply(str) + '> Link to ClinVar</a>'
     reportdata.to_json('test.json',orient='records')
     str_io = io.StringIO()