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Bugfix .bai secondary file for ApplyBSQR behavior
[arvados-tutorial.git]
/
WGS-processing
/
cwl
/
helper
/
gatk-haplotypecaller-with-interval.cwl
diff --git
a/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
b/WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
index 4b3d1a79fc809fbdecccf1cd2da6b17617311680..0b6c1029ddc3f135ec39fbb834587906f336ffe3 100644
(file)
--- a/
WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
+++ b/
WGS-processing/cwl/helper/gatk-haplotypecaller-with-interval.cwl
@@
-25,7
+25,7
@@
inputs:
format: edam:format_2572 # BAM
label: Recalibrated BAM for given interval
secondaryFiles:
format: edam:format_2572 # BAM
label: Recalibrated BAM for given interval
secondaryFiles:
- - .bai
+ -
^
.bai
reference:
type: File
format: edam:format_1929 # FASTA
reference:
type: File
format: edam:format_1929 # FASTA