- .sa
- .fai
- ^.dict
- sample:
+ sample:
type: string
label: Sample Name
filteredgvcf:
type: File
format: edam:format_3016 # GVCF
- label: Given interval filtered GVCF
+ label: Given interval filtered GVCF
outputBinding:
glob: "*g.vcf.gz"
arguments:
- "--java-options"
- "-Xmx4G"
- - SelectVariants
+ - SelectVariants
- prefix: "-R"
valueFrom: $(inputs.reference)
- prefix: "--remove-unused-alternates"
arv: "http://arvados.org/cwl#"
cwltool: "http://commonwl.org/cwltool#"
-$schemas:
- - https://schema.org/version/latest/schema.rdf
- - http://edamontology.org/EDAM_1.18.owl
+#$schemas:
+# - https://schema.org/version/latest/schema.rdf
+# - http://edamontology.org/EDAM_1.18.owl